On This Page

File size: 2.3 GB

md5sum: 3a1636bd176257c0edad991660b13bfd

curl

wget


curl -o xeniumranger-4.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-4.0.0.tar.xz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KGPwwaLgbd31D9N3PzY0dq7rpKfg0ECVIKjHZYnqjP6FTLDZPxXTT-jEh7nZToY8DZt262Vev~o7KTavfBNk0CNi500ymhjDnUB6mbmteSVrF7jaOkPRfLCZZpdbXPQhplMCFe~ITyv8mB0QEAK4oJyMjVwpJkQ6JkIdy2I3YiNG2bpJSL5hYibxeOz8noNATeGdkeZVz6B73f6aNOeB-pm7AiXZ2z0rlXwVOqIF3vw37li95dn7YpfI~qFcKL-qLWBfrDqM4hs7GletO~gigSXRS887WxtRugeXr-jCV1I0h2~jyResoFGhGwtDzPCMiLUq1qlNqqokRdsvKT8y2A__"

Download is unavailable on mobile devices.

Xenium Ranger 4.0.0 highlights

Supports reanalysis of Xenium Onboard Analysis data up to XOA v4.0.
Segment previously un-segmentable large cells with the new large cell segmentation feature.
Substitute a boundary or interior stain with a Xenium Protein image for multimodal cell segmentation.
Map cell IDs between a Xenium Ranger output and the imported segmentation to join metadata for a third-party analysis.
And more - see full release notes.

Xenium Ranger 3.1.1 (Mar 11, 2025)

tar.gz compression

File size: 2.9 GB

md5sum: 38c202b0fd5ea38522627e9df129a873

curl

wget


curl -o xeniumranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.gz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=i~P5civO58jFTpRcBNO9p57WAOjKWFWq0m2nASLJ-8ekUJUV2Hgbjd1k86VTReke8peYLLcB4Kp9bawq2pCGq208gEIcitrkfHoZr9OfL3kNflfO1V2dUy3d005nFRlTePLlL1KGxnlDPq5-rwdRoUFk2uZrBPwIL1IAHVpjfLxIPdAcJOHiKp-AE3AL5mh76N0YQQgQVjlsqlj-AQCTJT4zxe05RNI-PUSAAgaEvVkLmHx-AgpOpMATlyF-srEj1Q1olfefmS1pmTgz3uWluEGxraYvOOIR5r4l5jiw30Gc4T6fb4-m0S1se2-z4D9ygAI2Crtls4xB7r9tiXP4fg__"

tar.xz compression

File size: 1.8 GB

md5sum: c38f7bb506d7675481c55d6555a3694d

curl

wget


curl -o xeniumranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.xz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Z5MozyvGup4fntXCmPHMJFrx0ntgXiBuKlNr4D4NnVQjEzo~4aItzXM~kxhUwdyDYrXqjxC-ebn51fcdbFyTBhy-gnNmOLhEksfJDQoP~DH9kHdwyfEeJHBjuCAc42YHumBs6KOl9E4--zRGdwKCgxoTAB027jV~hM-O1y7gRWWLBh5z37K9G55kRRlyOU8XMtwdYkpoBk~RkL81M5nvk9LUZ-7xXxs2C24PoKrVKcw9DA9jhZ09ESVxybq-ASGK9BA1bsEQvgRKusOsm3QShmbQe~ZgWRHIOpYBVH~WOJcAbcIuLb6va9qt9acI1oR67BUqPNVPLLDxYdgKG4U5vA__"

Download is unavailable on mobile devices.

Xenium Ranger 3.1.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
Improved boundary stain cell segmentation.
Upgrades file formats to view per-codeword localization plots for custom and boosted genes in Xenium Explorer v3.2.
Fixed open polygons bug to enable importing Baysor v0.7.
And more - see full release notes.

Xenium Ranger 3.0.1 (Sep 19, 2024)

tar.gz compression

File size: 2.9 GB

md5sum: e8e98a0c6b4d5b127bcaf9801bfe3d69

curl

wget


curl -o xeniumranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.gz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Tq01I5rfoj-iltRKdDU8EYWGBFwXxWx6ewX6o2LvWKjWEzHCTwik-u9W1TvcYbUQRGYxejOifjXkAOQ5zRIkg3XrRHSBtPqKR1HoNupFezma7NoWil~KCDU6OMgCS54vXGgr7I~mK06IxbqL~pWDyq7sHSjoCLHoR3A7cf0kmxKjMiYwoJ-tL2gFfbZw-3Fa54R5fIKxy6UNOdNlUw6VssSz0iGgs9xNfvp3DhDBqs3j383Hkl8sXtKumU-xQbS6UEOGaNHl1dWglhrr5mkLKxpvS7k8aEwLV2rtoM267hYv2VGh6O6MURSRSbr1X7Lfzvrw~cNNrFRTkN4wiL-JcQ__"

tar.xz compression

File size: 1.7 GB

md5sum: 276f6073a170c236b76b04fa3919beef

curl

wget


curl -o xeniumranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.xz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=R-T9sHBx8LCW8GSO-L8wSvEc5R~4XXgmTUodZmcb~pFkBO8nEsgRF9S9pWaoK75ep1QmhhepK1PKhalM5Z9~VWjrA2K2J6IqvnnuBs4jU9ZaVsh~3md0g5CC3S5SusQCKC7-Z4dkbgx1Zefnej9xmudiXqBWL5SSi9-Ewu3cgPAaLDx6vhZKLS7JwBhv4FZVBD3l2dD52atFYwESD2OiZLrHGmwc0upblCAZtYCMyeek02dhCTQNOVD3DWXDfCLWfLOJdvVI6NsyV2JAb8VBn8o30s3bjhrieIJhMNub2X~evJ1WCTRS9Fi~Lp1cdEPMeuOJNUn~XPvoT6z63w~RfA__"

Download is unavailable on mobile devices.

Xenium Ranger 3.0.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
New rename subcommand for editing the region and cassette names.
Robust to corner cases of importing transcript-assignment data with empty cells.
And more - see full release notes.

Xenium Ranger 2.0.1 (Jun 10, 2024)

tar.gz compression

File size: 2.7 GB

md5sum: 45d207dc432226dc003a31a287f5ec08

curl

wget


curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Z-C0fyWVrFiRhLZXetak338MHOkD0lenKGtSj4IIVra62v4hxCZZ97xUohdN-sb~L9Yy51EqE-f707Oe8IUivettqqE5durtXWfRCV8IEgZ1ZyRe~puPczaluN6sfE3eYsjEGNL092fqxUSlY~Vi~SL2mLW4UedEFmVve1o07gVhurarmgA5AhqoEUammkXj4foKCVV8atQ8yrugNsnVbfwelvMIqQMnzIi8-eFMrGFmEyJvcjebeRSmqWJp5VtKO5fz-A8xSpWVir2iaoISnvknEwsgoLVuyPKEGgFB0DRrZiINsd9VwPgO1TIQ6sh1FYnpFGI3naZBleNLEbLUCQ__"

tar.xz compression

File size: 1.6 GB

md5sum: 244bdbb3d159ff557a7747c03ec487a7

curl

wget


curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=htEvd-9SjYvVmg-lWmWGaUPiIqBw624SdQDV0VTIwUq9vWSPq-tDeuolKI~wOhT7N8MgrWKiwb-3QrIf8hEu9uPSQeIcWW9DGHuiIYikezjEOta7fmiYw1hfOgt4fmBmTPfiaePnn18pPID5znuseb8lyM06-BcoAlmrZxR35hA4e~W7l8QCrCXvenE4zYcGLaBkU-laGKDYbfOUv0SQDKXdqoPeDTzEodIIH~T~CgJSdIgz59fGPkYPwP1IAHC18havKh9zwfYprQcJebtonK6~-xf31WkXYyxpJs95CLacA3iZPKLRauluAHPOlaOd6xVgjJwMDjiGm0RIXoEEQw__"

Download is unavailable on mobile devices.

Xenium Ranger 2.0.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
Default nuclear expansion distance is 5 µm.
Enables reanalysis with multimodal cell segmentation algorithm.
Interrupted runs can be resumed.

Xenium Ranger 1.7.1 (Jan 23, 2024)

tar.gz compression

File size: 2.58 GB

md5sum: 51c373964e46c041e08ba73888657edd

curl

wget


curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CRgl8DHKf~PNXhVIsUIbPVSDcqDkuqPMh4D-Dsozx6VhD9RaDReLb4MZePNoDC6CFwpV2Q3DWnMQyWZvqUZ2t0cc6UE6DnyLIp9N23uUeIVPCSf2g33rKcN6E9CExhbawta5eqBLkFRSVKNWQshrOTg22ktQ60SugrjHx5qKxiMD9JMHpmB2xN0RaiYVUYu91A~q7v9hm09vzpn6tgCMaeAdMhrjEofys-RMLza8ijiLrpTQH00nrvRwo~UpG~UG3AUOAaEMJfvxvCttESVwjRyQnJchbNdha8Zgps0c63nk4~cjQ~i7RU-B43ySXb3F3aIeu5IDfl4FqFzerqi~7g__"

tar.xz compression

File size: 1.56 GB

md5sum: 43e6e4433303aae30973682dc5219f20

curl

wget


curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FrLO66ZJrnuzqeLMTc-i1u23CMxqQMo3lxlxRjV0GK6npw-l8La9SGIV3TcMGWqHMPe~mrTVnpzQULkcY-IjsPu6mA8KycA7JOvNzWes~hxiCvrT7sz2Dnk0N4QsiteSK~nvTci8~3-kR4wCFGVKEYe3Fp4of0fOBpUTp3deCD~TzMeReNWK--hxTmJGRurznrU~UeesQ3KwD7b9s308ysK5dYLbVftwh8OhnLhtLY~UfDrUVRHl5n-3-0o2YEfefyXVnrVx8AJPhlPTzCLNL48YWNwKTWbUPO7otc~UsqPjzkQoJvvEqVOo~0J8Dr0d7slyq1KOYNLlov13mGJCfg__"

Download is unavailable on mobile devices.

Xenium Ranger 1.7.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to latest version.
Image-based import-segmentation now compatible with segmentation masks.
Improved memory usage in the import-segmentation pipeline.

Xenium Ranger 1.6.0 (Aug 17, 2023)

tar.gz compression

File size: 2.58 GB

md5sum: ebd970ceafc057668b9e664df310a5fb

curl

wget


curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LyuoJt7nvLT8-bk6zlZIuAp~yqm8oz8ScQSkftVpSxl6s2LflIWPhAf-Iy8jlV3X1~nVEGw3rv1~gA-2doK9vQ3bzFzt5hFqhGRnOVZ9TSZjMk~edew8kgeHwUDBHBDrxtwXV1dV7p-wJbV~wigU9SvAyD6xd8yzXfAcX36xvUISfRfxFuMQ2-enS415veeLhw368OBOxNuFU8WxEZ-gw8EscgaN~KcpZ0bFvyGVmQj0LXh7Nl0rjp7MWVIDd078jeusuNYraygSnKcSYywSwnHiymd-JhyWrF4VR1t0ZLYjtC6FuEM7Uijk~HNFBpbke3dP-DA4MXcBN69xBlpveA__"

tar.xz compression

File size: 1.56 GB

md5sum: 6fa799cfeef91264fdc174ad43b6da3f

curl

wget


curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1770486665&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZjgmiIhnSjs~pWamZzADpUOmlB99XzSo7ot0FqORNSUtkpaKMIoUFDiDA1P2UCBt-4YEtAGqEFSFLxZLEMLX5rAuB89KnYm-qtiymCG7SZKr75dYYYYK0UlHvV7LClrWxkvrXTsOPrsI17b1753pIagDE9lH25WhcHBipxlMIBftpLLhxxgku-PlVKlCz5TirhvIxTd0PWS3EshKlDVtjupKjdXK~jSNSnjLmfVTdtfzrZ5S4X9Y7YJxPBK-HOzryoUrbAthl0OKZ4nPdfIpiZzYljzjY7sAJLt7Vn2D-7ATmALaCkj1fH-PG1J3lT1ovQAZWVJRmTD6byqHzU75uA__"

Download is unavailable on mobile devices.

Xenium Ranger 1.6.0 highlights

Initial release of Xenium Ranger!
Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
Backwards compatible with all previous Xenium Onboard Analysis versions.