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File size: 2.3 GB

md5sum: 3a1636bd176257c0edad991660b13bfd

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wget


curl -o xeniumranger-4.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-4.0.0.tar.xz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GeU8p0iuRI6m3d~cDcg0-VzNQWawstBYqWHx6JEIWHz~9QRXhpQOkuhz5TShQdvxELN4WXd13NSz-idajUO2Bk8NkExYkEnrrISvCxwOis36gsr0FWAHFTxzXTxFOBy3ZtbzIJinBCIuxHTs8YAuV2C5kRFrTiOb6MOqxsYMtdgAGP0geKRlwfhqyeS4XqhK6hj~WezQDkhwvckIHgovmMNnc1zWwzjoPWly0AznJkhZB79j~nXieEIUcj31wqUsDdVzg6fJ8PbnuoteF297W7sOZOnybLGLXNL5fjPU-ziaY3Uzp99Blj8FoVLGinVMKutgXWxx77CCEOBRBZ9mLA__"

Download is unavailable on mobile devices.

Xenium Ranger 4.0.0 highlights

Supports reanalysis of Xenium Onboard Analysis data up to XOA v4.0.
Segment previously un-segmentable large cells with the new large cell segmentation feature.
Substitute a boundary or interior stain with a Xenium Protein image for multimodal cell segmentation.
Map cell IDs between a Xenium Ranger output and the imported segmentation to join metadata for a third-party analysis.
And more - see full release notes.

Xenium Ranger 3.1.1 (Mar 11, 2025)

tar.gz compression

File size: 2.9 GB

md5sum: 38c202b0fd5ea38522627e9df129a873

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curl -o xeniumranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.gz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gLt6PdKVmKxu~5PiX4HpuDYzIy2OkhiQJvREzIVqgyF~c6e~JTmZSQM7WRyQ94G1ckg~irgFjGurrV7MgXrJG3H57~ty8W-nrgfJE63lbDISFtTnSFqnysAaIQRqz2vo2OEM7RfU-EEhBzlg4YayDxTQBj00U8TvXKLDdYFW1~uJFLZDK5Fc2BwQCnb2YZB6b~RIjpoH~XQwSnzYYL-96auKyxuBF0XMb2tLGJomjpjdiDOR5~pxhUTE4Y-fV1kzw7UkW6mCKwtF4XjlkGqiBVkt1gLMjznTFYQPgpikOnYVL6GWJTjIIm-hvvvYSQ1WDXfvz2-9B4y2e~Bl4Tfgtg__"

tar.xz compression

File size: 1.8 GB

md5sum: c38f7bb506d7675481c55d6555a3694d

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wget


curl -o xeniumranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.xz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RklyPykKSg4tkF6WR8-zCKV1cz-oHJMxeyJTCzhVc3LOYLVomBHqFKZPeIUq5peNAaZt9QoR75eGxoVBpaUuYiFuTa3kvpqZdeodZ1O4nCJ1bKNa7r2huXJQfDMaW~c4TC96l6BG3pcy8rK5PBIe3BVHWCiGc-brDQsz6F1k72diIPvRt0f~QAF1kQv-v~mgm~5VMrco1oUOO3GRz0jqyKlchAKIHYgUygYx3DdNyHG9OkKXZ4531~7qqlG4l3d9-IEGDjxZu1ONVKvU~f5lMo-fTryNs1Sk1qaRavalqJKKJEu9Eth~kltwLarVitokTy4PbxdqEn1Y~4lHyKa3-Q__"

Download is unavailable on mobile devices.

Xenium Ranger 3.1.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
Improved boundary stain cell segmentation.
Upgrades file formats to view per-codeword localization plots for custom and boosted genes in Xenium Explorer v3.2.
Fixed open polygons bug to enable importing Baysor v0.7.
And more - see full release notes.

Xenium Ranger 3.0.1 (Sep 19, 2024)

tar.gz compression

File size: 2.9 GB

md5sum: e8e98a0c6b4d5b127bcaf9801bfe3d69

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curl -o xeniumranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.gz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Db10M-YSJh2QJv2n3AJkZ9AYNg5P5fOikD3QzCYtR47t~VLcc1msnyXOMwN0dIJTkiqAqctw2qis3yMAqmSEOk-n17FvOorm36nCkHR-JjVu3lHpMiLYAkVz6RGfWuEKiaHxEA9DGUi3wUQgYrQylXaAHpD40j3cZm9IEIVQqegyEmePu3tSKgv87KBfpUW-IjXJGvosRTadl4hLtQRxoYoov5GkMGf4cgrWbFHj~4geQ0eVgUgI00ro0YQhFxfxVdjUk5KsssmWEEC~QV9To58lv6UVtr4-~Zc1FbyP8gxYfNCSAVxJKghugTQLKwr4JHZ6-E09aoxOgEHNK8aJkQ__"

tar.xz compression

File size: 1.7 GB

md5sum: 276f6073a170c236b76b04fa3919beef

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wget


curl -o xeniumranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.xz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=a0JX9OeopgPy0C0fBlGu8YjVcBGQJOllJ7yp5KgVgEb9Em~kQ3OA~j9nyHZo5YlNA-2nB2liJ08cmPz2xajVVHWS5Lf7y1rWcQuI7b0iZbGaB11f7AYhHU5Utcc4f5q0S-QqtfUto7X1Ibn1ER2B2jR~E0p88CsK8kzxFzNr88vzRVV9ZCfjbiM2TjyxWYN5LIWxs6kTntMy~1PH~2idawZiEZFDYNdNg4Y2p~W60SDpaKV5L9XFlHDPfKpXQ69Lh1hfbgNkJ4GfLvk14WN9QHETflcrwRAzCGEb3y~q4e10jx9xcqktqvc2sYlvRUPM71wYoDnuNPhdCeOPi6xMUQ__"

Download is unavailable on mobile devices.

Xenium Ranger 3.0.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
New rename subcommand for editing the region and cassette names.
Robust to corner cases of importing transcript-assignment data with empty cells.
And more - see full release notes.

Xenium Ranger 2.0.1 (Jun 10, 2024)

tar.gz compression

File size: 2.7 GB

md5sum: 45d207dc432226dc003a31a287f5ec08

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wget


curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BA-U1Sxc-c30DF1ZzOLBU9RviX71sCfZCD0YzRFMdqvPzl-W0aAXrHthdoFST2rn8yv20l1jIOvSclHH4iDLYW-TJUE25gDMHKkyaTvDAQE9o1w~4HMWqYUNXCNZjflkyn~GCQZtjNB2kiUX87XxCuHGUh4OOlK7OsrgDQe9Y6CBKIyyrYn5dkxWPg0SBOF7nSBn9jWFTC2iii70KzSFF-UoND2rhbiV0KyCTH7eMaDrbVXT9F~3w7vZ4ZDsrWmqNjW8QysqWy6xgeJAAHsqzPlJVR7yQ2u7nCCV2DtkGmdQtl~D-KwBIL5~ahNQD3dodMt4Ns8nPafpGfhNcTNg6g__"

tar.xz compression

File size: 1.6 GB

md5sum: 244bdbb3d159ff557a7747c03ec487a7

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wget


curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HdA0VP928gIoTDfZQLK~EarWQ46zAXUk0sghkrpySNY~3IC9jwbdvkijyzYUN5X6mKzVik0mhyLNqOqDVQzNe7iLkSeXdRG8f46EX5NK3~l6N3yANHidlRuXcLDJYnJa1McitweQUbhZcrOQy9y4B9bXyJeyPFsiZXb5wsL4vENqvMfoi9ULk7SMnn7FOd4s6ipcYrNhRchaGtvxJmc-G5dFfLGyEPhxxkuveZcycUoqWyDaS~QOpIT9vJBHndj9w5Gr26-nodPvmXWkHBv8qYjECygprqipvg5NyRvgnmbT~S46t8jIoYjqs7MP9~bVApN3kzzIXxz3dTWcLpSO-g__"

Download is unavailable on mobile devices.

Xenium Ranger 2.0.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
Default nuclear expansion distance is 5 µm.
Enables reanalysis with multimodal cell segmentation algorithm.
Interrupted runs can be resumed.

Xenium Ranger 1.7.1 (Jan 23, 2024)

tar.gz compression

File size: 2.58 GB

md5sum: 51c373964e46c041e08ba73888657edd

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curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oefC6Q1h4LvT8LvWhusA~mVKjbabyDrdizhbWTDhF9wUSVSgqcnuAjiuvd~itbYWed6o0lS4nDTcN4LNzI~ymG2kURwVc8ScMecpHyYwQ3n7-HTYZcnxyLiYw8tP5VLs6J7iLuB~1hbq93weROm6h8QRY6Ek9QRJysB1GnFKMt7-zqsy93LljtRtoof7rgxQ3R6P6k1i0JLDhcLwjK0PvbewBRUNSEjBXlA-ZSuxnx2iMP6a~qZEGhO-0CTUOpeKzwOx60RzoF8cpIbLzGGn47TAbbJLsFbYb~NZc2BN~qUvOl3BpJ8JEqqzO5GPcwmtV9DTYbf6Fm4pwi-jUafLJQ__"

tar.xz compression

File size: 1.56 GB

md5sum: 43e6e4433303aae30973682dc5219f20

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wget


curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cglmcRWg6lpZOySL2By4XEZZFBNr6gbIvMXT1S9BgZHopRyWfrfWtfAdW-7E5~3OUeuHcB0c2pfyvS7vFrP8UVFYbyMO1E6pUqPJhEfVAs6TIPaSCa~KRhriWfNrJF7HMNJLOk72jWvhj~OMOurpev9Tl8Dl5vUqcUWhww9V94E~l~aGESNnPCFvzK4yOYm8FLUurL8RHbywnhZhK3YnpKfJpL6TvN5iJ5LJMW1ud3NiUWUxu43kbWndHDgDgQy9B2YgA-XH3bmoCwHGTV-kvK6y3fFCyKFfShYtvTXLzqLDoPcG79Wg0SPGpX4bMMJXBRXUOMeh8fukGd~WdB~g0A__"

Download is unavailable on mobile devices.

Xenium Ranger 1.7.1 highlights

Supports reanalysis of Xenium Onboard Analysis data up to latest version.
Image-based import-segmentation now compatible with segmentation masks.
Improved memory usage in the import-segmentation pipeline.

Xenium Ranger 1.6.0 (Aug 17, 2023)

tar.gz compression

File size: 2.58 GB

md5sum: ebd970ceafc057668b9e664df310a5fb

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wget


curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KBahUo3gcX~5E~q~UkSEHmSvhBmFNtGyyKDg7BQN-eGzs01REFX5zix~X20tc4FTxfhZc9jJLbjHqu1LPx9nnYzlIgTSHgcEgg6Dq2LqI-e~XjY1lb6FCT0t2PCa2Ps7jUTcMmCWGgNdwwKcalGYak0O7Qs-e6kMzqN6p0~eoZyFb2WrMtQCwgRolAeNEOp-wGn0rTYv-ZdsW~efGPUaehiivxpNEagB1ErsNPsG-mKI4CQ7~AtS5l4EAPBNg6PoSMXBPGVW5U2HoPFPlEGwCTZBIHi9oH6NGIxnCBusz~vx1eyZ~PP3ojxgoTIsmbwplRt78DdAAwoyLwm-eGK7fA__"

tar.xz compression

File size: 1.56 GB

md5sum: 6fa799cfeef91264fdc174ad43b6da3f

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wget


curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1765089550&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FKO9Gq6fdnCDaER2hkK9fOGgjfT1oePqQE0ufGXHoL6LZ6SsVx8wnJiOVCgDl~YALnAgpuho~5iiYvcIkaEJdNXBqDbD~sJIpk4FnI8-PstShjjbjPzVrSPsGBzYOMr9rMKWZzDRFwr3siH0vr~sjQewrTLK0KOBbslcjOeg05UtSWPEGE8JQXHvkEfL0f2Cy~HsDH3R6bp-lK9m3scCR77iLa0lScvMmqVyEDzXeDN7COqXhYx9yoa5tJpEEvtiZoUUCGkix4CMAuCAh~Tclb~uXcpZ8htT3mrnnibC35a2er6Sj7SrMlabi1~qnRgEzIbMgiD~tp4xTNVrHxLyCw__"

Download is unavailable on mobile devices.

Xenium Ranger 1.6.0 highlights

Initial release of Xenium Ranger!
Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
Backwards compatible with all previous Xenium Onboard Analysis versions.