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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1765093088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DZqeb7~uExuM1nKOVtJiJaeTaAU~6waZRP61u~JNJ5HK0I7-mmG3yj585taTvoJYgOSdL-ekNBTIgYayOk4DBYuRYXtv1au6wW8CKGsaECGE~6V9MDy7wZRge69jsynNNYbdO0MxGIrxks6C2MU8lWFQM-EWx0ONQxVKNipWj4f3xljH57fmxd~bYVjHtOmEwtvzBQTXCi9K6TxYG0i9xSYn8jdR~xgkXUliMm1w-DFYTEwbOmPlekfQdVOHKjuMtW9~LAPUJa~VuWTLC9w7jBB4UrRi9Xrf8AEsQAmPPhTFvJe-BzwGUXwzqFZqpM-UoGKAAPzUuqz0r-pzXRCBXg__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1765093088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YG-N8UNBewPxZlo3rGQa6AdTMaHEE4fLpecWkuFJpFPhRr7j30t343njaECV20uZtRHGoISayTmWTx1pOn8LXuT8ZB-SG7U2NTZumv7k-FDBvR-BlRWGgiVsjrW70mLl~mRM7nFZVm~xEA-x8RzYcn6ErkvGJRHKE-Phuvm6qmQUOBxkBVq3zPcVtqxA4ZilO3qlrZLNtAiROczPD8CLwy2coYmhEb78lR~G~mv6aPVlSvcm1RRgfEcLqU0vPbVr3dIs~AeCGnfId9uCzZPxYMoKRv3vZPahuLkVG5GbmY2oz7~eE-Rm-GLNLSGwLAOa36-eq6QTC8w9Rth8z6cFcw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes