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Previous Versions

Previous Versions

Xenium Explorer 4.0.0 (Aug 18, 2025)

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Xenium Explorer 4.0.0 highlights

  • Supports the visualization of Xenium In Situ Gene and Protein Expression datasets.
  • Import previously created Selections.csv back into Xenium Explorer.
  • (Experimental) Load datasets stored in an Amazon Web Services (AWS) S3 bucket.
  • And more - see full release notes.
Release Notes

Xenium Explorer 3.2.0 (Dec 10, 2024)

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Xenium Explorer 3.2.0 highlights

  • Improved image export with high resolution.
  • View per-codeword localization for custom and boosted genes in Xenium Prime 5K data.
  • Edit lasso selections.
  • And more - see full release notes.
Release Notes

Xenium Explorer 3.1.1 (Oct 21, 2024)

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Xenium Explorer 3.1.1 highlights

  • Fixed a bug that caused custom cell groups to be lost after closing Xenium Explorer.
Release Notes

Xenium Explorer 3.0.0 (Jun 18, 2024)

Download is unavailable on mobile devices.

Xenium Explorer 3.0.0 highlights

  • New scaled transcript view to visualize spatial transcript distribution for highly and lowly expressed genes at any zoom level.
  • Export viewport as a transparent PNG.
  • Sorting of transcripts and cells in Selections window.
  • And more - see full release notes.
Release Notes

Xenium Explorer 2.0.0 (Mar 19, 2024)

Download is unavailable on mobile devices.

Xenium Explorer 2.0.0 highlights

  • Supports the visualization of multimodal cell segmentation, including coloring cells by segmentation method.
  • Customize colors across images, cells, and transcripts with a custom hex# color selector.
  • Supports the import, alignment, and visualization of immunofluorescence (IF) images with >6 channels.
  • And more - see full release notes.
Release Notes

Xenium Explorer 1.3.0 (Nov 9, 2023)

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Xenium Explorer 1.3.0 highlights

  • Align and explore an immunofluorescence image from the same section directly on the Xenium data.
  • Adjust, add, or download and share keypoints after the image alignment workflow is completed.
  • Import up to two post-Xenium images per sample.
  • And more - see full release notes.
Release Notes

Xenium Explorer 1.2.0 (Aug 17, 2023)

Download is unavailable on mobile devices.

Xenium Explorer 1.2.0 highlights

  • Align and explore an H&E image from the same section directly on the Xenium data.
  • Import a CSV file and view clustering results from community-developed tools.
  • Use the lasso tool to export Cell IDs for further analysis in community-developed tools.
  • Streamline files for Xenium Explorer visualization - Z-stack morphology.ome.tif image is now optional.
Release Notes

Xenium Explorer 1.1.0 (Apr 3, 2023)

Download is unavailable on mobile devices.

Xenium Explorer 1.1.0 highlights

  • Explore Xenium image-based in situ data with intuitive controls.
  • Organize markers of interest and visualize 3D localized transcripts at any scale.
  • Examine segmented cells colored by transcript density or clustering result.
  • Compare gene expression profiles and cell type proportions across tissue regions with a versatile lasso tool.
  • New: Save imported gene groups across sessions with Saved Views.
  • New: Compatible with all Xenium Onboard Analysis versions, but required for v1.3+.
Release Notes

Xenium Explorer 1.0.0 (Dec 7, 2022)

Download is unavailable on mobile devices.

Xenium Explorer 1.0.0 highlights

  • Initial release of Xenium Explorer!
  • Explore Xenium image-based in situ data with intuitive controls.
  • Organize markers of interest and visualize 3D localized transcripts at any scale.
  • Examine segmented cells colored by transcript density or clustering result.
  • Compare gene expression profiles and cell type proportions across tissue regions with a versatile lasso tool.