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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1765093789&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Uz2XaRRgnkqaRqh3Y1PAVVOwVEcOwhOtRzI~ww8c~JlHJfpyD~MdpMxVoMHZmXtKst-oMz6ld-vhxT87CA4uxw70qFed~A~LCbFvz22f18TkYoJaCZ9kYCJCcPTcNDOTygjBRvsU3r~2~-a0T-w1eLKtIdgecj6CNUE3SYDpc5PmU6NBD5BfV6f-bIUX11U3-N5pQWhg9ONRvhqb-Rpxx~Xd9Pggmi9TsO856dFrzefCL6Mm4PbTc2b~gICZvujjbPoqPQnazI-ZGY9EPAKbDoNcEfW7P6tC76pwImZ6oScTXvZW2NKvG0It5xjx~xo3GfL0I8hlDKkTehN8GI697g__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1765093789&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Oo75BYub-COPiiJL8Klc4jp8nreY3gf372sh-ArBbyJgEYrwgNuUrmifJv3Lgk9WXVL365c-5UIkbSjyFe2N9lLwFvvR6Pyo5e2q5BGlPC6IU47HVa-5D~VCp4akURjWlarvXq4mCgCYg7hPnZfEIEmrfLBOG~0uhpKWioYW-nR0ouv~ZdppXbzRnPHkCO59neBeoaIEiLVG0Pnmp~1XxTTStqvVZWz-1TZEIVO9htqWgP08JG17uHj~tTw4xvX1dZgWZ-Hdw9HSfxbJqJ49dWExw2J~nscUSKRxeMptW~cl42ywC2ZbD0XE8HfsfnLK9FiKumDV5ftcdiRXrt2CUQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes