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Previous Versions

Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1765093086&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MKJ~4fy-E18q4HDqw2Mj~1LGJGD7~T0DOSAx2I~rhEweYfQaCCsYIO26F80ge5bQeNHHlncsk69mBd5wh7o-XLkJWHkF68FRN83AAmZSJ0UHURxCNMaP4LyvyjcFcVezqbvOmfBrCWMRai~PzCkcGbJzUEn7GWxU03z4nb5V730VVGxqZmPtjkycvtT79lPxlJdTY5ws1xf9SF4AlpkS~KPGc6Qcd1gtXEjKxMNjErRwnErXXxD9-U4cEdRVMcz8plUX7QoEHK8y2ohRtRz8pBHGfAQX7EX~w~pLgtjEaZhr2zce1V46vQ7CkMkvmVrSKzOSqFDhZS0-lO5aKgr9Rw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1765093086&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Af0i2Xjo57lfUCguHIBEtKIeklr79Ti06ox0dUxFi3CFKhiETCj8eZ7KTx1PjcRe3UAjLRe5ERI13gbxb-drbM61BU9IuA7vmK49bWvuM3uQ7Q79mq2jrqNj~E~tdbtmJvAdnqe2b390nc9p4eDLyEC4vKNUO-qYs-rmQpWGgN3EYhJKUPlqZb9znUFOSto4p~GY3cSN5WztAUWjC~fOWsWbhByoAP0zSRwcLhj7H2IDuecX2VJmbF52DOzOoFoeo8z9Vk9YvqjiHEF09lRNCgGSR1HQjSW7KV07wKkl~XbRI6YH3JMvbhKZKJMXFd1TZ7bXUY1tIYH4~WgId3~X8w__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes