Previous Versions
Cell Ranger ATAC 2.2.0 (Apr 30, 2025)
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Download for Linux 64-bit (tar.gz)File size: 661 MBmd5sum: c616198bd9aaca393f99c71e07ae46b6curlwgetcurl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774665198&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=i3i8-k8D-TqN9MzJ1MQuPU0VxOcQHRTCUskF0nTnpMw5c6MEA2rombBfJZUdXvLrATfQSjQkavbWb17y6CdLLssElJjY4mtlr~J4XWECN3YBa5Yki8qrHlJbUZDI~DHcK73o7i9wpoO8B-YOx92iGkbeXw5pHaYodsarHzkPsont0nhkUfAbzZRlqNgwbB35IAo-0aP8xO3U~3gaXz7t9YHXsvWLY4kkSy~hYs1dg7MfhYTdDDZzLHNcWoA-J6ZAfCEC8Q1VOnLbyDiZGgHKZSilW1CZGwvOqS9xxKEwLxR8U1X7LysBhBFv7FyamAdvmAms6k7vIhuqyZjSTemZGg__"
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Cell Ranger ATAC 2.2.0 highlights
- The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
- Strand information is now included in the fragments.tsv file for easier downstream analysis
- The --nosecondary parameter is now enabled for count and aggr pipelines
- Minor performance improvements
Cell Ranger ATAC 2.1.0 (Apr 4, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 528 MBmd5sum: 3f44ba66ae789c2ab03f9c380a6718cacurlwgetcurl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774665198&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YyX1IAfv3PjBGGfggzaVBzfF09RBQp4Fd8YcuXTgb9QOk2mkKL7OMqGGTUX2sifFDtyo2XsiTzg~gyK1AGeBJ6XCwxCLFkqRLtPjAJ~kIpDGXBcKnZg6rZD4N~kB5NwrNUiGsLeJ2bLbSrDAN9s43pxyS6bTdmZsLYZhcfnNvK7fJOKU1K337qdpnngHZ9uuI8h0S7XCyDpbVxoNqK4oaRJf-Z9-ySHIlcBS9QrNjhJzQEl-rHSzRPrE4K0i6bZmja07g10HqDXHnleZSVRvv1GAEUD0QUeUMcYU0Zyi5LYgm2dPkNojmNGXDMrf5P87~Re6CMKTwffkqwCe8ccu-Q__"
Download is unavailable on mobile devices.
Cell Ranger ATAC 2.1.0 highlights
- Added a batch correction algorithm to `cellranger-atac aggr`
- Minor cell calling improvements
- Added UMAP as an alternate projection