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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774660932&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Xs994eeFMEfE1lGuMd2eiXXYFIpZt6yjB6usW2rgyPBtB~5DSG3P0GJiEUhGbPqksikVt-gHkIEXJG0Gqrk5mgruHtbOAAPYzJtx5ttbCNs-muVXirvjl0ygUSXvbxdYmYOmsS3FGqhwwcBbzhSfY1YnPrCSM0j~Voc-ZM8kQDv-g-HKV9tv0F1aVkiX0NRqKJowztfl7m0ar9~H8b55SswNusVJuPRnyGrMQOGH3z7AiNRkX~ZAw7NJd4zvndirPEZgZPKB2qBUsMajTFmSGYqdsVXKiGsBh37z3dBlnqZYPAJ8kDVRja18Ovd4hQP-Nocv4kArKpGT~4ZOV32m1g__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774660932&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=L8sYslmdaQsTbKYDgFEgMfhJoPJK5hSVOuvg-8QJoTTKLaYoM~cTJYlJH~TxmL~82D2Dor7zhW6fdq3kfesMb8q52kWWr6bQdTTZfYkxq~gi8HD9Jz~HVvfjosXCNzSJynqRkv0xXW4H6HhkmzxGIj-3XBT8NyS~7iCpenWIZVhWyraYZzLvOIgJ7u9rmAYOIytj2cvoREwBqozPXbw62FsgZWlur1PgQRe8ZfSns8yX1BHJwbBkBrBTwhAVqwvml8P1TrHtU5Eby8b9zJyr0r7nGjtRYVpsT08VN~IhCZyb3LWhanPsHAx8futol5SAt9kb2vgj7MtgothErh0V0A__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection