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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774665690&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cUrm54OZvupfBituD1JuiCTBcJ3kbTq7vN8SLMZ88iF7SIOz9Lcbw5IYMEMMP7JVAlpNkUq44jvXNdWFwHRWhPkPE08GX1WhmOgkx4fTvxHBylWQ2XuZteryQRZ~N6Wa-QUVEX9m8o6ygPpGF3V06urWigcu~wn~wne6TrCZfHc7XeKCalHp7YlzKXhXS4V8rYrL0o-9HBb3LYHUkW49rwCztRGQrlidlAKJyupOkVEb-MlXzu08j64o~HIBXdbmIF2D6aXCEFt3-efh1o4ZOABxff5xsP~uZWGRMUscSG~WnmeK05TiU6Y9sBHT8rONbVoOzskFY3MoLKBkC1Gx3Q__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774665690&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=K073scuc1PfTJlFhhOWLv~UHSvm3umxg0XZ-6pXTunBhiv1tNqm1u~oPPNQzOUrZoiJTCGDR-g17rUQ-p0QbgMn6zs~zHwuPS5fQXAv4UsBrhorMMETGpXh2BtV0uKztj7IKbmM0vWkLIrksf6QVMI7pxolAwviqvc99jJbSyoEmfF4zGgBzTVOQ-Rx2hPiwM5pun1fFbBH7L~pkycgK0IYCX0cKTCB6KwkeSDShmh~64dmgwyz-j4Bkt9~SRkFrV1sN5O~g64RXvNu586arh7VlXelKcDUd4tow~WMA8sujXhsYivGHxjCZcoJyZBpPc3dVHa6mGFw9PQ-rN8u7ZQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes