Previous Versions
Cell Ranger ATAC 2.2.0 (Apr 30, 2025)
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Download for Linux 64-bit (tar.gz)File size: 661 MBmd5sum: c616198bd9aaca393f99c71e07ae46b6curlwgetcurl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774660929&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SKsxpfWtlNiVQ3upwE1YCg05qWQ-dwtbNQl6m3rRz4wk0PPyCjbtQIhoIAeWFawdb14zQW8jlhEg6PGAmMufr3-vcpdES3zWmVCJufDgqvkq3GnO73AekWWextN9frgBpQCQzFH0~UgYM3pr1Z3dVjRwLGQz8KsgMs9L-3mffFt7ufY49tO7-TFiVSGG3upzjowbwT951TAJgOzbRU9ToxGEiwnXk0~epyW0EP4JoIezvE~~8i9zbealqdvRCq8-kS4sLvLlWe93XSWXGiQLj3mtx4PI5~UHC3YAZjUtq7md-id9ZxKvuoqCbgUF9w62sonQAEdwDBsL04IBcV6WgA__"
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Cell Ranger ATAC 2.2.0 highlights
- The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
- Strand information is now included in the fragments.tsv file for easier downstream analysis
- The --nosecondary parameter is now enabled for count and aggr pipelines
- Minor performance improvements
Cell Ranger ATAC 2.1.0 (Apr 4, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 528 MBmd5sum: 3f44ba66ae789c2ab03f9c380a6718cacurlwgetcurl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774660929&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=I~YWf54ubbrFPzWqw2IPFl19Pe82VITKch1ha76pcGK-HeQBw4I1CHMJBBF4DD4B2yyxSSUm3-JTwduoo6gGZHuuj29wZrF3RoimIU7JJJnFUcVo4TyA1oN4i7ZPoea1PT45SKbXuN1Szx1hSAYw6lQ-2XP62mACfJWfzCo1B-blpfa6AL1gtLPINOyvvC-H3IC716NvZlPQ0bRq9erq2VJZ7YhTpfK3Qz87~ex0SGscy2mI8BSj00syi1k~29KDZ4zJ4LtrQyfUbHjqr8VadojXdPuN9Vh2aifqvBitHroU9L0uq2ZRuO4H8JnIjW24stuPl1Wzs9agsQ~ClDhXvw__"
Download is unavailable on mobile devices.
Cell Ranger ATAC 2.1.0 highlights
- Added a batch correction algorithm to `cellranger-atac aggr`
- Minor cell calling improvements
- Added UMAP as an alternate projection