Support homeCell Ranger ATACDownload and Installation
Previous Versions

Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1765089929&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jINyOuNJpO4cWNO3ebNqMl22XvHlgQkzUHuWOuEM7ZOXsxwoa7GR-81As4PxfifjvPp0lUrwkminlGl-xeucbzqtLBRf8HMJ4lXXJR3qNT7jSbBGT9Vio2a2v1jbVFvnXDBxkYXGjDWprdWtFg4OWMQY6TeF9W3lV5ZPV0dBI~3-GfBGiOUsEPZrsTkpb~kQe1k~qhbLehuAjqoETaCIalYjIGwUXEguscyV6VeWETi-Z8~o3i1Lw2PXcd8xY38nuPUE6T9zpVaTpyMZKH~NB~LI7UfYZJvo7qN-f9xihcLD-num3g84Jw1bnFh3N~Ag9OYOjX9DZihNBamHXQp3hw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1765089929&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kwhG6YHdEl1EvYxO8rDCSqyTR-vMYL-fkFi6orRTPI8AR-hNI-6dantfYeCnSmYl9YqOc0YU~EhK~H-W1F1JYV26f35ZTEKhVnQxJJVIfaXPM4FyzYvuVJRcX2Q~dHQCoxGAcRGKntYvV~2UVGYUtLMP8NOqDOb-D99vwnmDz8~NjFLM6vhovBCnq6HfY-S~NhA8LlbZcDudnHOWyhT7TpOtiqBbU6XQldLQOFjH7ajLn3uHMJoEYpj9YDpCffk~dIhK4n-O~yyMASlf5GqWMMYGl9b3p-s1qdFyEs61M3w-UFPumFh8gpBt4qjiNEYiMRwTQyzkybFjI-LpaP4mQQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes